Provide the path to the directory containing the target python file as shown in 5 of Figure 1.įigure 2. Provide the path to the “bin” folder inside the target MongoDB installation directory as shown in 4 Provide the path to the “bin” folder inside the GlassFish Server Installation Directory as shown in 3Ĭ. Path to GlassFish Server Installation Directory Provide the path to the folder containing the target java on your system as shown in 2 of Figure 1.ī. sh file you will be prompted to enter the following information: The following command (as marked in 1 of Figure 1):Ģ. Run the configure_slide.sh file located inside the slide directory. To install SLIDE unzip slide.zip into your preferred installation directory.ġ. To install fastcluster 1.1.23 use the following command inĪfter the dependencies are installed, go to Section 2.3 for instruction on how to download and Of Python Numpy may have to be installed separately. Sudo install -m 0755 -o $USER -d /data/dbĭetailed installation instructions for Anaconda’s implementation of PythonĪnaconda’s implementation of Python has Numpy pre-installed, so noĪdditional configuration steps are required here. The directory has to be created directly under root ‘/’ directory.Įnter the following commands at the ‘Terminal’: MongoDB requires creating a specific directory that it uses as its usr/bin/ruby -e "$(curl -fsSL /Homebrew/install/master/ĭetailed instructions to install MongoDB using Homebrew are available To install MongoDB with the package manager Homebrew, issue the Place it in your preferred installation directoryĪ detailed GlassFish server installation guide can be found in of Follow the screen instructions to install the JDKģ. Double-click the downloaded Disk Image (DMG) fileĢ. The process is also brieflyįor macOS, jdk-8u151-macosx-圆4.dmg is the JDK installerġ. With screen captures on installing the prerequisites, see section 2.5. To install the prerequisites you must have administrative permissions. SLIDE requires the following software to be available on the system before you can configure it to The table below shows a typical system configuration thatģ.6GHz quad-core 7th-generation Intel Core i7 SLIDE has been tested on various systems. This manual is a step-by-step installation and configuration guide for running SLIDE on macOS. It can be used to visualize the data at different levels of granularity through It allows users to interactively navigate through the heatmaps and create subanalyses of selected feature sets. SLIDE can organize and visualize quantitative –omics data in expression based heatmaps Systems-Level Interactive Data Exploration (SLIDE) is a user-driven interactive visualization tool for largescale –omics data.
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January 2023
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